rs50732969 SNP Detail

Summary

• ID
  rs50732969
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:92274160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCGCAGG ACTGGACCCT
  TGTCCACGTA GCTCACCTCA GATGCCTCAG AGGTCCAGGT CTCATTTGCC AACCCCATCT
  CTTCCCCCCC CCCCAACCCT ACCCACAATC CACCACTGGT CTGTTTTCTC TCCCTATGCA
  TGAATGAAAC GGGTCTGTAA TTTCTAAAAG CATCCCAGTT TTTTTCTCTA CCTTTTTGTG
  K
  ATTTCTCCTC CTTAAATCAT GGCTTTATTG TCTCAGATGT CTGTGAAGTT TTAATTGCAC
  TGTGTGTGTT TGCAGATGTA CATGCATACA AATGTGTGTG TATGGGGAGG GGCAGTTCAG
  GAGCTGCCAT CTTGGTTTTT GAGACGGTCT CTCATTGCCT AACATTTACC AGGCTAGGCT
  GTCTGGCCAG TGAAGGGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60508519	NES16520117	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50732969					SNP	G	G	G	G	G	G	G	G	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60508519	NES16520117	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:92274160 () rs orientation: forward

Symbol	Name	Function Class
2410124H12Rik	RIKEN cDNA 2410124H12 gene	1470 bp upstream
Cpgi8471	CpG island 8471	1347 bp proximal
Rr319727	regulatory region 319727	1041 bp proximal
Rr325586	regulatory region 325586	1359 bp distal
Rr325587	regulatory region 325587	1440 bp proximal