rs50733121 SNP Detail

Summary

• ID
  rs50733121
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122295244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAC AAAGAATGGC AGGCAGAGAC
  Y
  CAGAGATGAT GAGAAGAGAC CAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147010217	ENSMUSSNP5502404	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss324857810	CHEV_14_122457054	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50733121					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122295244 () rs orientation: forward

Symbol	Name	Function Class
Gm63354	predicted gene, 63354	within coordinates
Gm63496	predicted gene, 63496	555 bp downstream
Rr498317	regulatory region 498317	8 bp proximal
Rr498318	regulatory region 498318	222 bp proximal
Tssr127312	transcription start site region 127312	506 bp upstream
Tssr130315	transcription start site region 130315	230 bp downstream