rs50734348 SNP Detail

Summary

• ID
  rs50734348
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28685534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCA TGCCGGGGGT CAGGGGACCC
  C
  GAGGTCAAGC GCGATCGCGG GGGGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137502225	ENSMUSSNP1259620	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss323971719	CHEV_12_29320400	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50734348					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28685534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4510	CpG island 4510	within coordinates
Gm53713	predicted gene, 53713	534 bp upstream
Rps7	ribosomal protein S7	within coordinates
Rr255850	regulatory region 255850	1867 bp proximal
Rr265285	regulatory region 265285	within coordinates
Rr369505	regulatory region 369505	262 bp upstream
Tssr116014	transcription start site region 116014	295 bp upstream
Tssr116015	transcription start site region 116015	297 bp downstream
Tssr116016	transcription start site region 116016	308 bp downstream
Tssr116017	transcription start site region 116017	332 bp downstream
Tssr116018	transcription start site region 116018	356 bp downstream
Tssr116019	transcription start site region 116019	379 bp downstream