rs50734490 SNP Detail

Summary

• ID
  rs50734490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116029643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCAGAT GTACAGTTTA
  TAACACTATC TAAGATTTAC CAATTAAACA ATGCAAAAGC GAAAAGATGT GTTAGATGAC
  AACAAATAAG AACTTGAGGG AAAACATGTG CTTTAATCCG TTATATAGAC AATGGCTATC
  ATTATGATAC AAAATAATTT CTAGAATTCA GAGAAATTTA ACAACAACCC AAAAGTTAAA
  Y
  AGGTAAAAGA TATAGCCGGG CGTGGTGGCG CACGCCTTTG ATCCCAGCAC TCAGGAGGCA
  GAGACAGGTG GATTTCTGAG TTCAAGGCCA GCCTGGTCTA CAAAGTGAGT TCTAGGATAG
  CCAGGGCTAC ACAGAGAGAC CCTGTCTTGA AAAAAAAAAA AGAAAAAGAA AGAAAAAGAA
  AAGAAAGGAA GGAAGGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60437823	NES15932437	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	T		C
ss320894725	CHEV_3_115938912	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50734490					SNP	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437823	NES15932437	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116029643 () rs orientation: forward

Symbol	Name	Function Class
Rr583677	regulatory region 583677	877 bp proximal
Rr583678	regulatory region 583678	1735 bp proximal