rs50734522 SNP Detail

Summary

• ID
  rs50734522
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26492444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCTTCTG TGTGAACTAC
  TGCTGCAAAG GTGACTATAT ATCGGGCTTT ACTTGACAAT TGTAAGCTGG ACTGTGGATA
  TCTCAGGACT CTGCCATTTC ATGGGGACTG GGCCTAGAAG AGCAGATTTG GTTCTGGGTC
  CTGAACTGCT GACCAAGTAT TACCAAGTAC TATCAAGTAC TACAAAGTAT TACCAAACAG
  K
  ATCACCCTTC ACATTGGTGG CCACAGAAAG GGCTTTGGGA CAACCTTTTC TGGCCAGCTG
  CACAACTGCC CTTCTGAGAC TGATAGGGTT TTGATGGCCG GGCTCCCAAA CAGTGCCTTT
  AATGTTAGGC TGGAACATTT TCTCCAGCGG CTCAGCTCCA TGCAGCCCTG CTGCAGAGTG
  GAATGTCAGG AGCTGACAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52328614	NES15372070	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50734522					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328614	NES15372070	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26492444 () rs orientation: forward

Symbol	Name	Function Class
D12Mit219	DNA segment, Chr 12, Massachusetts Institute of Technology 219	1332 bp distal
Rr464136	regulatory region 464136	1677 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	301 bp downstream
Tssr112998	transcription start site region 112998	1296 bp upstream
Tssr112999	transcription start site region 112999	1343 bp upstream
Tssr113000	transcription start site region 113000	1467 bp upstream
Tssr113001	transcription start site region 113001	1941 bp upstream
Tssr113002	transcription start site region 113002	1965 bp upstream
Tssr115902	transcription start site region 115902	412 bp downstream
Tssr115903	transcription start site region 115903	744 bp downstream
Tssr115904	transcription start site region 115904	761 bp downstream
Tssr115905	transcription start site region 115905	1066 bp downstream
Tssr115906	transcription start site region 115906	1194 bp downstream
Tssr115907	transcription start site region 115907	1249 bp downstream
Tssr115908	transcription start site region 115908	1289 bp downstream
Tssr115909	transcription start site region 115909	1375 bp downstream
Tssr115910	transcription start site region 115910	1427 bp downstream
Tssr115911	transcription start site region 115911	1477 bp downstream
Tssr115912	transcription start site region 115912	1491 bp downstream
Tssr115913	transcription start site region 115913	1526 bp downstream
Tssr115914	transcription start site region 115914	1578 bp downstream
Tssr115915	transcription start site region 115915	1607 bp downstream
Tssr115916	transcription start site region 115916	1664 bp downstream
Tssr115917	transcription start site region 115917	1710 bp downstream
Tssr115918	transcription start site region 115918	1729 bp downstream
Tssr115919	transcription start site region 115919	1756 bp downstream
Tssr115920	transcription start site region 115920	1783 bp downstream