rs50734777 SNP Detail

Summary

• ID
  rs50734777
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122034845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATGGATG TAACTCACGT
  TAGTCGGATC AAAGTGTAAG TCACTGTGCC ATGTGACACA TGTTTGTCAC ATCAGACTCC
  TGCACCACAG GGAGTAGATG CTTGGAAATG TACAAGAAGT CAGATAAGGT AACTGTCCCA
  TGGTCAGTGC ATTTCCAGCA ATAGATGCCT GAGCCCATGG ACCAGGTGTG ATGCACCGGC
  R
  GAGGTGGCCA GGATGGGTCA AACCCAAGAG AAACCCAGAT ACTAGCTGTT AACATCACAA
  CCAGGCAGCA GCAGCGAATC AGGAACCTAA AAGAGAAATG TATTTCTAAT AGGATTGTGT
  CACAATGTCC GGGGACACCA TTTGGGTGTC CTGAATAATT TTTCAAACCT GAGTTTGACA
  GCATAGGCTT TGGCAGTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135737673	ENSMUSSNP1050405	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50734777					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122034845 () rs orientation: forward

Symbol	Name	Function Class
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	1908 bp upstream
Rr375675	regulatory region 375675	1564 bp upstream
Rr584261	regulatory region 584261	1546 bp proximal
Rr584262	regulatory region 584262	1919 bp proximal
Tssr31477	transcription start site region 31477	1907 bp upstream
Tssr35442	transcription start site region 35442	1393 bp upstream