rs50735706 SNP Detail

Summary

• ID
  rs50735706
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36555977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGCCCCAC CCCGCCCCGC
  TCCGCCCCGC CCCGCTCCCT CCACTAAACC TCAGCCTGAT TCTCAGGCTG GACTAGAGAC
  GTGCGCACAC AATCAGGGTT CAGAGGGACC TCAGGGATGC CAGATCTCAG GCCAGGGTCA
  CCCTGGAGGC CAGAGGCTGG AATTTTAGAG ACTTTTGAGG AGGAAAACGT GCCTCTGTGG
  K
  GCAGGGAGGG AGGGACAGTG TCGAATTCAT TTTCAGAGAG CTCAGCCCAC AAAAGTTAAG
  AATCCTGTCT CTAGCCACAT GAACATTTTA TACAGCTGCC AGAAAGTCAC TGATCCAACC
  CTGCCCCAAA TCATCAGAGC CAGGCAGCTT GCCTAAGGAA ACAGAGCTTC TCCAGGGGCC
  ACTTCAGGGG CCAGGTCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147602911	ENSMUSSNP3174628	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50735706					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36555977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7030	CpG island 7030	212 bp distal
Rr311658	regulatory region 311658	within coordinates
Snx31	sorting nexin 31	259 bp upstream
Tssr134019	transcription start site region 134019	484 bp upstream
Tssr134020	transcription start site region 134020	293 bp upstream
Tssr134021	transcription start site region 134021	253 bp upstream
Tssr134022	transcription start site region 134022	240 bp upstream