rs50735871 SNP Detail

Summary

• ID
  rs50735871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15079099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATTCTAG GTCTGAAAAA
  GGGGACAGAA CACCTGAATA AGGAAGATGG TCTCAAGAGT CACTACTTGC AAATCAATTT
  TTATTCATAA GAAATAGAAT TTTAAAAAAA AAGGTTTTAA AAGTTCAATT AATATAGAGT
  TAAAGGCAAA AACAATGAAA TACAAGAACA AGAACATATA ACTTCTAAAT AACATATCAA
  Y
  ACTCAAAGAA CAAAAACCAA ACAGATTTCT GCACTTTTAG CCGCACAGCC CTACAGCCTG
  CTGCTCCTCT TGGACACTTG GTGGCAGTGC AGTCGCCTCA GTTCTCTGCC AAGAGACTAT
  GTCTGAAGAG AAAAGGGAAC AACGCACTGG ATCAGCCATG GCTTCCTAGT AAAGGCCTAT
  TCACCCTAAG AAAATGAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	NOD/ShiLtJ	PWK/PhJ
ss364069369	MGP_WTSI_5_15029085	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	NOD/ShiLtJ	PWK/PhJ
rs50735871					SNP	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364069369	MGP_WTSI_5_15029085	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15079099 () rs orientation: forward

Symbol	Name	Function Class
D5Mit103b	DNA segment, Chr 5, Massachusetts Institute of Technology 103b	1565 bp distal
Gm17019	predicted gene 17019	within coordinates
Gm71745	predicted gene, 71745	within coordinates
Rr111907	regulatory region 111907	102 bp proximal
Rr121523	regulatory region 121523	764 bp distal
Rr121525	regulatory region 121525	201 bp proximal
Rr121527	regulatory region 121527	1017 bp proximal
Rr121528	regulatory region 121528	1492 bp proximal
Rr128307	regulatory region 128307	1199 bp distal