rs50737546 SNP Detail

Summary

• ID
  rs50737546
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:54075794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATCTTTAT TTTGTCTCAA
  ATGGGAAACT GTATGTGTGG TAGGAGGCAC AGTATCTTGG TCCAGGTCTG TTGGTAGGAA
  GCTGTTTCTA GTCATCTGTC CACAGAGCTA TTGCCAGGAC AGCAGCAAGC CTATCTAGGC
  AAAGCTTGTC CCAGGAGTCA GAGGCCACTG GGCAAACCCT CCATGTGCTT TCTACCTCCT
  K
  AATGAACACA GGAAAGTAGA TGGGCTAGCT GCATGCCTAT TTTGATTCTC AGGACAGCAG
  CAAAGCTGAA CTTGCTGTTC TCTGTGTAGG CAGGAGGGCT TCTTCCTGGG GAATACAGGA
  ATTTGTACAA ACTTGTTCAT TTCTCTAGAA TGCACTCTGT CTTTCCTCAC ATAGGTAGAT
  AATTTCTTAT GTATCTTCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	WSB/EiJ
ss62787611	NES17356793	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	WSB/EiJ
rs50737546					SNP	G	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62787611	NES17356793	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:54075794 () rs orientation: forward

Symbol	Name	Function Class
Tssr145231	transcription start site region 145231	1055 bp upstream
Tssr145232	transcription start site region 145232	1063 bp upstream
Tssr145233	transcription start site region 145233	1091 bp upstream