rs50738606 SNP Detail

Summary

• ID
  rs50738606
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78229719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTTGGCTC TTCAACACCT GCAAAATGAA AGTAGCCCCC
  AGGAGGGCCA CACAGATGTG GGAGTGCTGA GTTAGGGGCT GGAGAACCCA CAAGGAGTCC
  W
  GCCAGCAAGT CTGACAAAGC CTTATCTCCT AAGGAATGGA GGGAGGCTGC ATGTCAGTCT
  CTCCCGGGGT CTTCATAAGC CACGATGAAC AGGAAGAATG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61427604	NES16812098	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50738606					SNP	T	A	T	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427604	NES16812098	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78229719 () rs orientation: forward

Symbol	Name	Function Class
D9Mit74	DNA segment, Chr 9, Massachusetts Institute of Technology 74	1501 bp proximal
Gm8074	predicted gene 8074	83 bp upstream
Gm70041	predicted gene, 70041	within coordinates
Gm70238	predicted gene, 70238	within coordinates