rs50738838 SNP Detail

Summary

• ID
  rs50738838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:84855409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGAGTCAC CTGGGAAAAG
  AAGACAAGAT GAGCTCCAGG AGGGGAGGCA GCGGCCTTTG CCCTCCATGT GGGACTGCTT
  CACAGTCTGC CCCCCTCGCT ACGTCCCCAG CAAGATGAGC AAGACCCAGA GTGCAACTCT
  TTTGACCTGC CTCAGCCTGT CAACTCCCTT TTGGGACTGA CCATCCCAGA AACCCAAGGC
  Y
  GGAGATCCTT ATGGGTAGCC CAGCTCTCCT CTCAGTTGGA GAAAGGAAGC CTCCTGCATT
  CCTTCCAGGT GTCCAATGAC AGGAGTCCCC ATTTCCCCAC CCACCATCCC CATCAGACCC
  ATAACAGACT TCCTCCCGCC TGTGGCCTTG ATCATGTGGG TTACCCACCA TCCTCTCTGC
  CCTGAGCTGT GGATTAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61659988	NES17614201	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50738838					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61659988	NES17614201	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84855409 () rs orientation: forward

Symbol	Name	Function Class
Ltbp2	latent transforming growth factor beta binding protein 2	within coordinates
Rr469730	regulatory region 469730	1497 bp distal
Tssr114362	transcription start site region 114362	1598 bp downstream
Tssr114363	transcription start site region 114363	1569 bp downstream
Tssr114364	transcription start site region 114364	1541 bp downstream