rs50739368 SNP Detail

Summary

• ID
  rs50739368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:146788744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGC TTTTCATTAT TCAGTTCAGT
  Y
  CTGGGTCTGA CAGGGGAAAC TGAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss134003329	ENSMUSSNP2221820	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss322083548	CHEV_6_146835768	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50739368					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:146788744 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18173	CpG island 18173	780 bp proximal
Gm66444	predicted gene, 66444	756 bp downstream
Ppfibp1	PTPRF interacting protein, binding protein 1 (liprin beta 1)	1241 bp upstream
Rr139437	regulatory region 139437	1544 bp distal
Rr139438	regulatory region 139438	1144 bp distal
Rr145955	regulatory region 145955	456 bp proximal
Tssr59600	transcription start site region 59600	1235 bp upstream
Tssr59601	transcription start site region 59601	1347 bp upstream
Tssr59602	transcription start site region 59602	1386 bp upstream