rs50739868 SNP Detail

Summary

• ID
  rs50739868
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:96662655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCATGCT TGCTTGCATG
  TGTGTGTGTG CACGTGCATG TATAATTGCT TTTGCTTGTG TATCACACTT AATTTTTACA
  ATAGCTCCAG CTCCCAGGAG TTGCAAAAGC AACTATAAAG CCTAGTATTA GTGAAACTCC
  TGCATGTTTT TGTTTACTTC ATTTTCTGAA TTGCCTACTT ACAACAAACA GAAATTGGCA
  M
  AGACTTTTCA TAAAAACAAG GCATAGCTAT GCTATAGTCA TTTCTTCATC AAGGAACATT
  AAGTGATTGC GTTCAAAGTC CTGCCTGAAT TTACAAACCA GTGCTCTAGC TGCCTGCCTA
  TAAGACTCTA TTATGTAGAG TACTTCTTTC ATTGAGCCTG GTTCCAGATC TGCCAATTTG
  TAAATATATC TATATATCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52166376	NES15315110	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50739868					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52166376	NES15315110	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:96662655 () rs orientation: forward

Symbol	Name	Function Class
Gm46240	predicted gene, 46240	within coordinates
Gm48521	predicted gene, 48521	within coordinates
Rr230614	regulatory region 230614	1987 bp proximal