rs50740652 SNP Detail

Summary

• ID
  rs50740652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32879272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGCTAG TCTATCTTTG
  GGTTTCTGCT TTATTCCAGA AGGGATTTTT ATGCCCTTCT CATACACCTC CAGCACACCT
  GTGCCCCTGG CGAGTTCTTT TCTGACTCCT TGCTTCACTT TCCTGAATCA TATCTTGCTT
  AGACTGCTCT TTTCTACTAA GATTAATCAC TGAGGTCTGC TGCACAACCT GGATTAGACT
  R
  GAAGCCTCAT CTTTTGGTGA TCTTCCTTGA TCCTAACAAT TACACAGCAT TTGGACTGTA
  ACATAGGACC GTTCTCTCCT TTGGTTAACT TGGTCTTGAT TGCTTCATTC ACAGTTCTCA
  GATCTCACAG CATGCATGCA AGTCCTTGTG GGTGGTGGTT GCTTGTTGGG GAGCTGTCAC
  TTTTATGGAG TCTTAGGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62679575	NES17313162	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50740652					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62679575	NES17313162	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32879272 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	within coordinates
Gm65897	predicted gene, 65897	1617 bp upstream
Rr525786	regulatory region 525786	1628 bp distal
Rr525787	regulatory region 525787	1388 bp distal
Rr525788	regulatory region 525788	1059 bp distal
Tssr143725	transcription start site region 143725	1385 bp downstream
Tssr143726	transcription start site region 143726	1321 bp downstream
Tssr143727	transcription start site region 143727	1296 bp downstream
Tssr143728	transcription start site region 143728	1278 bp downstream
Tssr143729	transcription start site region 143729	1257 bp downstream
Tssr143730	transcription start site region 143730	1240 bp downstream
Tssr143731	transcription start site region 143731	1219 bp downstream
Tssr143732	transcription start site region 143732	1207 bp downstream