rs50743009 SNP Detail

Summary

• ID
  rs50743009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:4500014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTTTTG TTTTTGTTTT
  TCAGTTCATA GTCTTAGTCA TTGTGCTGGA GATATTTGAA TGCATTTGCT GCTGGATGCA
  TTACAGAACT GTCCCCTCTC ATTCCCTGCG CCTTGCCTTC CTCCTTGTTT CACTGAAATG
  CTCTTTGTTC CCATCACTGA CACCCATGCA CAAGCTCTCC AGCTGCCCTT GCACTTTACA
  Y
  TAGCTTCATA ACTACTTTCT GCTTGATTGG TAGTTTTTGA CCTTAAGAGT CTCAGAATCC
  ACTGAGAATT TGGTTGGTGA AGGTTATGGA TATCTATCCA GGGTAACATG CACACACATT
  TTGTGTACAA AACTGGGGGG TAGAAAGTGC CAGTGTGCTC TCTCTTGTGC ACGTGTATGT
  GTGTGTGTGT GTGGTGTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63636434	NES17047713	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50743009					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63636434	NES17047713	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:4500014 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7918	CpG island 7918	1539 bp proximal
Dnaja3	DnaJ heat shock protein family (Hsp40) member A3	1920 bp upstream
Rr370034	regulatory region 370034	1556 bp upstream
Rr391260	regulatory region 391260	within coordinates
Rr510905	regulatory region 510905	1883 bp distal
Rr510906	regulatory region 510906	1430 bp proximal
Tssr136865	transcription start site region 136865	1949 bp upstream