rs50743812 SNP Detail

Summary

• ID
  rs50743812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121426049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTACCCTA GGTGGTCTCA
  TTCACAGAGG TGGAACAGGT CTGAGCCAGC CTGCTCAAGG CTGGGGGAGG CTACAACCCA
  CCAGAGGTAG TGGAAAAGAA AGGAGTATAT GGGGGAAGTG GACCTGTTTA GAAATGGTAC
  TTTGGAGCAA ATCCCATCTG TGCAGTCAGG AAGCCAGCAG TTCAGCTTAC AGATCAGCAG
  Y
  GGCAGCTTCA TCCACTTGCA AACACTTCAT GACTATACCA GCAGTCCATC GGTGGCACAG
  CCTAGCAGGA ACATCCAACC CTCAGTCGAA TCTGCAGGAG TCAACAGGAG GAGCCAGGAC
  CATCGGGGAT GACAGGAGAA GTTCTCGGCT GTGCCTCTCT CAACAAAGTG AAGATCAGCA
  AAGACTGGAG ATCAAGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61239948	NES16854022	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50743812					SNP	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61239948	NES16854022	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121426049 () rs orientation: forward

Symbol	Name	Function Class
Gm57058	predicted gene, 57058	within coordinates
Lyzl4	lysozyme-like 4	within coordinates
Lyzl4os	lysozyme-like 4, opposite strand	within coordinates
Rr199244	regulatory region 199244	1649 bp distal
Tssr92055	transcription start site region 92055	226 bp downstream