rs50743866 SNP Detail

Summary

• ID
  rs50743866
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57719298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATC CACACACCAG TGTGCAAGCT
  G
  GCCTAGGAAT TCCCAATCAA GTAAG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132181228	ENSMUSSNP2352093	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss323685750	CHEV_11_57641974	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50743866					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57719298 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	112 bp distal
Cpgi2911	CpG island 2911	601 bp proximal
Hand1	heart and neural crest derivatives expressed 1	241 bp downstream
Rr447811	regulatory region 447811	715 bp distal
Rr447812	regulatory region 447812	within coordinates
Rr447813	regulatory region 447813	474 bp proximal
Rr447814	regulatory region 447814	1013 bp proximal
Tssr3506	transcription start site region 3506	798 bp downstream
Tssr108123	transcription start site region 108123	484 bp downstream
Tssr108124	transcription start site region 108124	545 bp downstream
Tssr108125	transcription start site region 108125	577 bp downstream
Tssr108126	transcription start site region 108126	763 bp downstream
Tssr108127	transcription start site region 108127	836 bp downstream
Tssr108128	transcription start site region 108128	843 bp downstream
Tssr108129	transcription start site region 108129	974 bp downstream