rs50743951 SNP Detail

Summary

• ID
  rs50743951
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:57588833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGATCACC TCCTGAAATC
  TACCTCAAAA ATATAGGTAA ATTTGAACAT GTGAATTTAG AAAAGACTAA ATATACTCTG
  TGAGTAATAC TGATTTTTTT TAAATAATCT AAATTTTCAA AGCAAGGCTC ACTAGAATCT
  GCTATCATTT ATATATGGGA TGTTCCACCA AAGGACTGTG TATTAAAGGA TTGCAAAATG
  W
  TTTAGACTAT CAGGAAGTGA GGATTTATGG AGGATCATTA GATCAGTGGA CCCTAGTCAG
  TTTTTCTTGT TTGTTTCCTG TTCTACAGTG GGATTGGTCT GTTCTGTAAC AGATATATTG
  TGGTCCCCAG GGTTCCAAAA TGATTGAGTC ATTATTCTTA AACCAGAAAC TCCAGATCCA
  AGAACAAAAT GAAACTTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60617287	NES16285836	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50743951					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60617287	NES16285836	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:57588833 () rs orientation: forward

Symbol	Name	Function Class
Rr814	regulatory region 814	534 bp distal