rs50744173 SNP Detail

Summary

• ID
  rs50744173
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58409506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGTCTCCA GGCCTCAGTG GGGGAGAGCA TTAGAGAGAT
  GAGAGAAATA GAAGGGTTGT CTCTTCTACC AAAGGCAGCA TGGTGGGGCA CTGAAGGGAG
  A
  GAGACTTCCC TTTAAATACA GGGAAGGAAG TGCACTTCTG ACTCTTCTAA GTTTCAAGGG
  GTGGATAAGC TTCAAACCAC AAGAGTTAGC CTGGCCTGG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320783038	CHEV_3_58306007	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50744173					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58409506 () rs orientation: forward

Symbol	Name	Function Class
Gm66340	predicted gene, 66340	890 bp downstream
Rr375034	regulatory region 375034	1944 bp upstream
Rr577237	regulatory region 577237	within coordinates
Rr577238	regulatory region 577238	1834 bp proximal
Tssr29204	transcription start site region 29204	95 bp upstream