rs50745228 SNP Detail

Summary

• ID
  rs50745228
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54970688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAA AGACCATTCA CTAGACAAAG
  G
  GAGAACAACT TAAGGAGCAG AACGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133206775	ENSMUSSNP3845280	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321805148	CHEV_6_54943697	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50745228					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54970688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17470	CpG island 17470	355 bp distal
Ggct	gamma-glutamyl cyclotransferase	741 bp upstream
Rr366742	regulatory region 366742	592 bp downstream
Rr630884	regulatory region 630884	1046 bp distal
Rr630885	regulatory region 630885	895 bp distal
Rr630886	regulatory region 630886	263 bp distal
Tssr61105	transcription start site region 61105	825 bp upstream
Tssr61106	transcription start site region 61106	796 bp upstream
Tssr61107	transcription start site region 61107	782 bp upstream
Tssr61108	transcription start site region 61108	767 bp upstream
Tssr61109	transcription start site region 61109	746 bp upstream