rs50745518 SNP Detail

Summary

• ID
  rs50745518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:76022367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGCAAT TAGTAGGTTT
  CCAGTAATAA CTGGGGTGCT TCTAAAGCTG AAAACGAACA GTCCCACCCA TGAGGGCACG
  GCAGGAACTT CCAAATCCCA AGCAGATGGC CAGTGCACCA GGTGGAAGGC CGCCGAGAGG
  AGGATGCCCT TTGTGGGCAG CCACTGCCTG GCAACCAGGA AGGTAGACCC AGACTTTCCT
  Y
  TGGAGATTTT AAATGGTAGT GCTACATAAA AAAGTTGTCT AAATGGTGAC TTCTCTGATG
  CCATAGTTCA TAATTACAGA ATTAGCATAT TTCATAATTC TGTTATCCAG AGGACCATTT
  CCTCTGCTAA GAAGAATCAT ACCATAGGTA CTAAAGATGT GACCTTTCAG ATTTCTTTCA
  GTTCCCACCC AAGTAAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52665158	NES15472129	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50745518					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52665158	NES15472129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:76022367 () rs orientation: forward

Symbol	Name	Function Class
Rhobtb3	Rho-related BTB domain containing 3	within coordinates
Rr273737	regulatory region 273737	1234 bp proximal
Rr277199	regulatory region 277199	833 bp proximal
Rr277200	regulatory region 277200	1234 bp proximal