rs50745682 SNP Detail

Summary

• ID
  rs50745682
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:83724447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACAAAGG AGAGTTTGAA
  GTAAAGCCAA ACATTTCCAG ACTCTCCTGA CAACAGCAGA ACTTTTACAT GAGCTAGCAG
  TTGTGTAAAA CATAGAGAGA AGAACTTCCT GTTAACATGT GTTTTCTCTT ATTCCTGAAT
  TTTATAAACC TGGTACTATC TTTTCTTTTC TACACCTCCA GTGATAATGT CTGTAAGACA
  S
  AACCAGTTTT GAAGACTTCA AATATCAAAT GTTCCATCCT GTGCTATGAA CCTCCATTAT
  GCATTATGAG TTCCTACAGT CTGAGTCACT GTCTTTATTC TGGAAAGAGT AGTCTGGCTA
  TGTGAGGGTG ACTAGCAGGT TTAGACACAT CTTTCTGTTG AATATCAGGT GTCGATCCTT
  AAAAGGAATC AGTCTACCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61892638	NES17096065	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50745682					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61892638	NES17096065	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:83724447 () rs orientation: forward

Symbol	Name	Function Class
Gm55122	predicted gene, 55122	within coordinates
Mef2c	myocyte enhancer factor 2C	within coordinates
Rr483254	regulatory region 483254	1765 bp distal
Rr483255	regulatory region 483255	1085 bp distal
Tssr120506	transcription start site region 120506	1844 bp downstream
Tssr120507	transcription start site region 120507	1185 bp downstream
Tssr120508	transcription start site region 120508	694 bp downstream
Tssr123330	transcription start site region 123330	1308 bp upstream
Tssr123331	transcription start site region 123331	644 bp upstream