rs50746002 SNP Detail

Summary

• ID
  rs50746002
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATAAATA AATCTAAAAA
  AAATTAAGGT TCAGCAAACT AGCTAGCTTT TTGTTTCTGT TTCTGTTTGT TTGTTTTTCT
  GTTAGACAGG GTTTCTTTGT ATAACAGAGC CCTGGCTGTC CTGGACTTGC TTTGTAGACC
  AGGCCGGTCT CAAACTCAAA GATAGCTGTA TGCTGCTTGA GTGCTGGGAT CAAAGGCATG
  S
  ACCACCAAGC CTGGCCTAGC AAACTAGTTT AATCACGGTT CTTTCACCAA GCCGATCATG
  GGCAACTTTA AAGCAAGAAG AAAAAGATGC AGCATACTAT TCATTAAAAG GAAAATAATT
  TTCTGGGTTG ATGGTATGTG CCTTTAATCC CAGCAGTCTG GAGGCAGAAG GAGGGTCCAT
  ATAGCAAAAT CCAGGTGAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647301	ENSMUSSNP6349006	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
ss322398763	CHEV_7_117910750	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50746002					SNP	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366443 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	970 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	Noncoding-Transcript-Variant
Cpgi19579	CpG island 19579	847 bp proximal
Rr653308	regulatory region 653308	557 bp proximal
Rr653309	regulatory region 653309	1185 bp proximal
Rr653310	regulatory region 653310	1686 bp proximal
Tssr68503	transcription start site region 68503	827 bp upstream
Tssr68504	transcription start site region 68504	870 bp upstream
Tssr68505	transcription start site region 68505	902 bp upstream
Tssr68506	transcription start site region 68506	933 bp upstream
Tssr68507	transcription start site region 68507	1379 bp upstream
Tssr68508	transcription start site region 68508	1594 bp upstream