rs50746385 SNP Detail

Summary

• ID
  rs50746385
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110949856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCCAAGG CCAAGAGGGC
  ACTTGGAGTC TCCGAAGCGA AGTCTCTGAC GTCCTCTCCT GGCTGGGGGT TCCCAGAGGC
  CGCAAGCAAC TTGATCCCAT TTCTCACCTG CTCAGAAGCA GTGTCTGCAC AGGCCCTTAG
  CCAAAAAGTC CAGATGAAAA TGTTCGGGGG AACCTGTGCT ATGGAGCAGT GGGAGAGGCT
  S
  AGAGGTCAGT GGGCCACAGC CAGTCCCTGG GCCATACCTG CTGAGGCAGG AGCTTGGATG
  TGTGCTGCAG TCATGAGGTG CAGATAGGGG GGAGGAAGTT ATTTTGCTTG TGAGATAGTC
  AGGCATACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC AATAATACCC
  GCTCCCTGAG AGAAACAGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61718136	NES17662595	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50746385					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61718136	NES17662595	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110949856 () rs orientation: forward

Symbol	Name	Function Class
Gm48630	predicted gene, 48630	1952 bp downstream
Gm51959	predicted gene, 51959	within coordinates
Gm60603	predicted gene, 60603	1952 bp downstream
Rr254698	regulatory region 254698	1745 bp proximal
Rr259298	regulatory region 259298	within coordinates
Tssr3954	transcription start site region 3954	1983 bp upstream