rs50747681 SNP Detail

Summary

• ID
  rs50747681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52315438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGGGAAG GGGAGAGGGG AGAGGAAGGA GAAGAGATTA
  ACTCAAGATA CAACCAGAGC ATAACAACAG GATTACTGGT TTTAGTCACC TCTTTTCCTT
  Y
  TTATGTTATT CAAAACTCAA TTTGATGAAA AATGCTGCAA GAGGAAAGAG CCCCCCCTCA
  CACATACAGT AAATGATAGG CTTGACTAGA CTTAAAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139500768	ENSMUSSNP2326668	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50747681					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52315438 () rs orientation: forward

Symbol	Name	Function Class
Hnrnpc	heterogeneous nuclear ribonucleoprotein C	within coordinates
Rr289029	regulatory region 289029	1163 bp proximal
Tssr128488	transcription start site region 128488	49 bp downstream
Tssr128489	transcription start site region 128489	1545 bp downstream