rs50747990 SNP Detail

Summary

• ID
  rs50747990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69691885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG CTGCGGTAAC GGCGCGTGCG
  Y
  GGAAAGCAGA GCCGGGCCAC TGCGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146730540	ENSMUSSNP2095604	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320332355	CHEV_2_69699598	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50747990					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69691885 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11719	CpG island 11719	within coordinates
Rr397021	regulatory region 397021	884 bp downstream
Rr397022	regulatory region 397022	within coordinates
Rr558483	regulatory region 558483	within coordinates
Rr558484	regulatory region 558484	32 bp proximal
Ssb	small RNA binding exonuclease protection factor La	78 bp upstream
Tssr18173	transcription start site region 18173	36 bp upstream
Tssr18174	transcription start site region 18174	44 bp upstream
Tssr18175	transcription start site region 18175	97 bp upstream
Tssr18176	transcription start site region 18176	634 bp upstream