rs50748677 SNP Detail

Summary

• ID
  rs50748677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCAACCA AACCCATCCC
  AAAGTCCCTT GGCGTCCCCA GTGGCATCCA AGCCTCAGAA ACTCAGATGT TTGGAGAGAT
  CTCCACCTTA ATTCAACTGG ATGGGCCCAT CTGTAGGATG GTAATCTTTC AGGCTAGCCT
  TGGCTAGCAT AGTGAGACCT GTGACAAGAG AAGAAGGAAA CAGGAGAAGG AGAAAGGAAA
  Y
  AAGAGAGGGA CCTGCACCTA TCCTGTCCTC TCAGTCAACT CCACCTGCCT GCTCTGTCCG
  GGGATCCTCT TGGTAAGTCC TTGGCAGGAC ATTGCATCCA CCCTTCTGAT GCTTGCATTT
  GCTCATTCTT TCCCCATCTA AGACCTGTCC ACAGTAACTC GTTCTTCTCT GCACTGTCTC
  CTGACCTCCA GAAAGCTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138742418	ENSMUSSNP4497451	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50748677					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393826 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	322 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	373 bp upstream
Ighj2	immunoglobulin heavy joining 2	691 bp upstream
Ighj3	immunoglobulin heavy joining 3	1074 bp upstream
Ighj4	immunoglobulin heavy joining 4	1639 bp upstream
Tssr115504	transcription start site region 115504	21 bp upstream
Tssr118005	transcription start site region 118005	1659 bp upstream
Tssr118006	transcription start site region 118006	1628 bp upstream
Tssr118007	transcription start site region 118007	1582 bp upstream
Tssr118008	transcription start site region 118008	1555 bp upstream
Tssr118009	transcription start site region 118009	1544 bp upstream
Tssr118010	transcription start site region 118010	1406 bp upstream
Tssr118011	transcription start site region 118011	1308 bp upstream
Tssr118012	transcription start site region 118012	1073 bp upstream
Tssr118013	transcription start site region 118013	1058 bp upstream
Tssr118014	transcription start site region 118014	954 bp upstream
Tssr118015	transcription start site region 118015	858 bp upstream
Tssr118016	transcription start site region 118016	704 bp upstream
Tssr118017	transcription start site region 118017	364 bp upstream
Tssr118018	transcription start site region 118018	170 bp downstream
Tssr118019	transcription start site region 118019	187 bp downstream
Tssr118020	transcription start site region 118020	243 bp downstream
Tssr118021	transcription start site region 118021	383 bp downstream
Tssr118022	transcription start site region 118022	415 bp downstream
Tssr118023	transcription start site region 118023	580 bp downstream