rs50748749 SNP Detail

Summary

• ID
  rs50748749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125566006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGC AAAAGGCTGA GTTGAGCAGA
  Y
  GATACCCAGG CTGTTGAAAT TTTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147486056	ENSMUSSNP5624705	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320497838	CHEV_2_125549822	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50748749					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125566006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12200	CpG island 12200	452 bp distal
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	1550 bp proximal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	1508 bp proximal
Rr367290	regulatory region 367290	543 bp upstream
Rr564270	regulatory region 564270	209 bp distal
Rr564271	regulatory region 564271	206 bp distal
Rr564272	regulatory region 564272	792 bp proximal
Shc4	SHC (Src homology 2 domain containing) family, member 4	mRNA-UTR
Tssr26008	transcription start site region 26008	549 bp upstream
Tssr26009	transcription start site region 26009	395 bp upstream
Tssr26010	transcription start site region 26010	363 bp upstream