rs50749120 SNP Detail

Summary

• ID
  rs50749120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24558372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGATTA CTGAAATAAG
  TGTGTGTGCG CGTGTGTGTC AATAAATTCA TCATTATTAA GCAGTTTACA TTCTTGTGTG
  TCTAGTGATA GGGGTCCTTT CCAGACACCT ATGTGTGGAT AATTTGTGGG ACCCAGGCTT
  CCTTTTAACC TGGTGCCTTG CCTCTGAGAA GAATTCCAAA GAGAACGGGC TAGGTGGATG
  R
  CCTGCAGTGG CAGACCATTG GCAGAGGAAG TGGATCTCTG CCCTTGTCTC AAAAGGCACT
  GATGAGAAGC GGTGACAGGA CTGGAAACAG AGCTCACCCT TTCCCTCAAT GACCCACATC
  TTCCAGCTGG GTCCCACAGC CCACAGGCTC CACACCCCCA GCAAGGCCAC TACTACCTCT
  GCCCTGCTCC ATTGTCTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324295893	CHEV_13_24466258	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50749120					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24558372 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Tssr4016	transcription start site region 4016	1661 bp upstream
Tssr118891	transcription start site region 118891	872 bp downstream
Tssr118892	transcription start site region 118892	1645 bp upstream
Tssr118893	transcription start site region 118893	1681 bp upstream
Tssr118894	transcription start site region 118894	1745 bp upstream
Tssr118895	transcription start site region 118895	1779 bp upstream
Tssr121784	transcription start site region 121784	1553 bp downstream
Tssr121785	transcription start site region 121785	1573 bp downstream
Tssr121786	transcription start site region 121786	1633 bp downstream