rs50749249 SNP Detail

Summary

• ID
  rs50749249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35388896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGAATTT TGTAAGGTTG
  GAGAGAGCAC ATGTCTCATG AACAAAGGAT GATTGAAATA GGATACAGAG AATAACAAAA
  GGCTGTGGCC CACATAGCTT CTTGGTAGGC AAGACCAGGA AGCTGGCAAG GAGCATGGGG
  AAGCACTGGG AGATGCATGG GGGTTGGGCT GGGACTTTTG TTCACATAGG TAGAGTCATG
  Y
  AGGACAAATT CTCAGATCTC ATCCATTAGA ACCACTCAGC ATTAGCGGTG AGTAAGTCGG
  ACAGGATCGT GAATCAGAAA TCTGCAGAGC GAATAAGACT GCTCGTTGTG CATTCTGGCT
  TCAAGGACCT CTGAGCTATA GGAATCTCAG GTACAGCATG ACAGTGGTGG CTTCTACAGG
  GATTTCTTGG ATGGTGGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60877198	NES15975911	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50749249					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60877198	NES15975911	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35388896 () rs orientation: forward

Symbol	Name	Function Class
Gm38789	predicted gene, 38789	843 bp upstream
Tssr55592	transcription start site region 55592	10 bp upstream