rs50749509 SNP Detail

Summary

• ID
  rs50749509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28911088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGC TGCGGACGCG GTGGGATGCT
  Y
  CTCTACCCTG CGCTCTCCCT GCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145423376	ENSMUSSNP6469398	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50749509					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28911088 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8896	CpG island 8896	within coordinates
Mapk14	mitogen-activated protein kinase 14	within coordinates
Rr370201	regulatory region 370201	678 bp downstream
Rr524632	regulatory region 524632	1945 bp distal
Rr524633	regulatory region 524633	364 bp distal
Rr524634	regulatory region 524634	within coordinates
Rr524635	regulatory region 524635	465 bp proximal
Rr524636	regulatory region 524636	1035 bp proximal
Slc26a8	solute carrier family 26, member 8	1881 bp upstream
Tssr143452	transcription start site region 143452	781 bp downstream
Tssr143453	transcription start site region 143453	715 bp downstream
Tssr143454	transcription start site region 143454	669 bp downstream
Tssr143455	transcription start site region 143455	643 bp downstream
Tssr143456	transcription start site region 143456	289 bp downstream
Tssr143457	transcription start site region 143457	156 bp upstream
Tssr143458	transcription start site region 143458	478 bp upstream
Tssr143459	transcription start site region 143459	504 bp upstream
Tssr147150	transcription start site region 147150	932 bp upstream
Tssr147151	transcription start site region 147151	880 bp upstream