rs50749564 SNP Detail

Summary

• ID
  rs50749564
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135777368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGATGCAC TTTGGAGGGT
  ACATCCAGAA GGTAGGTGCA AAGCAGCATC GGGCACCAGG ACACCCCAGT GTATCCTCAA
  GGCCGCCTTT GCTTGGATCC ATGAAGAAAT TCCCAACTGC TGTGGCTGAA GTCTAAGGTC
  TGCTCATGTC TAGCCCCTGA GCTGTCTATC AGCCTGACCA TGGCTTCAGT AGGAGGGCTC
  G
  GCTGTGTGTG ACAGTTAGAA CACTAATATG TCTCCAAATT CTGGCTCCCC AAAGGGACAA
  CTGGGAGAAT CTTGGGTCCT GGAGTCCATG CTCTGGTCTG CAATAACCTC CTTTTTTTTC
  ATGTGGCCTG GTACTGCTTG CCCTGTAGTT TCCAAGAGAC AGATGAGCTA ACACGTAAAA
  CATAAAAAGA GTGTGCTGCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145548321	ENSMUSSNP283524	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50749564					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135777368 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	1768 bp distal
Rr12645	regulatory region 12645	1033 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	1890 bp downstream
Tssr226	transcription start site region 226	1620 bp upstream
Tssr227	transcription start site region 227	185 bp upstream
Tssr9015	transcription start site region 9015	1894 bp downstream
Tssr9016	transcription start site region 9016	1642 bp downstream
Tssr9017	transcription start site region 9017	1604 bp downstream
Tssr9018	transcription start site region 9018	1586 bp downstream
Tssr9019	transcription start site region 9019	1553 bp downstream
Tssr9020	transcription start site region 9020	782 bp downstream
Tssr9021	transcription start site region 9021	762 bp downstream
Tssr9022	transcription start site region 9022	274 bp downstream
Tssr9023	transcription start site region 9023	200 bp downstream
Tssr9024	transcription start site region 9024	164 bp downstream
Tssr9025	transcription start site region 9025	115 bp upstream
Tssr9026	transcription start site region 9026	317 bp upstream
Tssr9027	transcription start site region 9027	427 bp upstream
Tssr9028	transcription start site region 9028	467 bp upstream
Tssr9029	transcription start site region 9029	1047 bp upstream
Tssr9030	transcription start site region 9030	1082 bp upstream
Tssr9031	transcription start site region 9031	1141 bp upstream
Tssr9032	transcription start site region 9032	1724 bp upstream
Tssr13890	transcription start site region 13890	1855 bp upstream
Tssr13891	transcription start site region 13891	1610 bp upstream
Tssr13892	transcription start site region 13892	1543 bp upstream
Tssr13893	transcription start site region 13893	1526 bp upstream
Tssr13894	transcription start site region 13894	777 bp upstream
Tssr13895	transcription start site region 13895	733 bp upstream
Tssr13896	transcription start site region 13896	206 bp upstream
Tssr13897	transcription start site region 13897	178 bp upstream
Tssr13898	transcription start site region 13898	1107 bp downstream
Tssr13899	transcription start site region 13899	1175 bp downstream
Tssr13900	transcription start site region 13900	1185 bp downstream
Tssr13901	transcription start site region 13901	1746 bp downstream