rs50749902 SNP Detail

Summary

• ID
  rs50749902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165063917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCTAAACA GTCACACAGT AACGTCACAC GGTCTCACGT
  CCTCTGAAGT CTGTGGTACT CAATGGTTCA TGTTCAGAAC CTCAAGAGCA CACCACAGAA
  Y
  CAAAGAAGCT CAAAACTAAA CATAAATACC ATTTCCGTCA TTGCCCGCAA GGGAACAGGT
  CATCGCGCCC AGAAAGGTTG CGCAGGCTTA GGTAGGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145997531	ENSMUSSNP2204273	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50749902					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165063917 () rs orientation: forward

Symbol	Name	Function Class
Cpgi949	CpG island 949	within coordinates
Gm38190	predicted gene, 38190	1223 bp upstream
Rr372385	regulatory region 372385	18 bp upstream
Rr422343	regulatory region 422343	within coordinates
Rr422344	regulatory region 422344	173 bp proximal
Rr422345	regulatory region 422345	585 bp proximal
Rr422346	regulatory region 422346	591 bp proximal
Tiprl	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	within coordinates
Tssr9804	transcription start site region 9804	146 bp upstream
Tssr14765	transcription start site region 14765	544 bp downstream
Tssr14766	transcription start site region 14766	632 bp downstream