rs50749937 SNP Detail

Summary

• ID
  rs50749937
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28391142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTTGCTT TTTGCATCGA
  TCCCAGCTCC ACGTGGTTCA CTCAGGGGCT CCCCGGAGTC TTACACAGGT TAAAATAAAA
  GATAAACAGG GTATGGTGAC ACTTGCCTGC AATTCCAGTT CTCCAGAGGT AGAAGATCAG
  TGTCATGCTT GGCTACTTAG TGAGTTCAAG GACAGCATGG GCTCTACCTG AGTCTCAGTT
  K
  AAAAGTAGGG CTGGAGAGAT AGATGGCCAA TTTCCCCAAA GGACCTGGGT TTAACTAGCA
  TCACAGGTGC TCTCGACCAC ATGTAACTCC AGTTCCAGGG AATCCTGAAA ATACCTCCTC
  TGACCTCCCC AGATACCAGG CACAAACATG GTGGAGACAT AAATGCGGGC AAACCTCCAT
  ACACATAAAA CTATTTTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148635371	ENSMUSSNP6104574	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50749937					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28391142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18715	CpG island 18715	1342 bp proximal
Fbxo27	F-box protein 27	1132 bp upstream
Rr644337	regulatory region 644337	950 bp proximal
Rr644338	regulatory region 644338	1812 bp proximal
Tssr65494	transcription start site region 65494	1099 bp upstream
Tssr65495	transcription start site region 65495	1138 bp upstream
Tssr65496	transcription start site region 65496	1286 bp upstream
Tssr65497	transcription start site region 65497	1295 bp upstream
Tssr65498	transcription start site region 65498	1315 bp upstream