rs50750093 SNP Detail

Summary

• ID
  rs50750093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89740270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTTGGTC TGGGCAGTCC
  CTTTTGATGC CCTGTGTCTG TGGAGGCTGG GCAGCATCCA GCCTCTACCC TTCCTATACC
  CGTGTCCTTT CCAGTCAGGA CAACCTCATA TGGGGGCCAA CGTCAAGTAG TTGAAAACTG
  TTACTGTCAC CAAGGGGGAA AGCTGTGCAT TAGATATTTC TCTCCAACTT GAGAGACGGG
  Y
  TTGTGCAAAG GAGTGCCTTC CTGAACATAG TGTAAAAAAA CATATTTTTG TCATGCGATG
  AAAATTTAAG CAGCCATTAA AATACGGTTT TTTAAAAATT ATTTTTATTT TATGTATATG
  AGTACACTGT AGCTGTCTTC AGACACACCA GAAGAGGGCA TCGGATTCCA TCTACAAATG
  GTTATGAGCG ACCATGTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52487143	NES15665434	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50750093					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52487143	NES15665434	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89740270 () rs orientation: forward

Symbol	Name	Function Class
Rr366841	regulatory region 366841	within coordinates
Rr667276	regulatory region 667276	76 bp distal
Rr667277	regulatory region 667277	1768 bp proximal
Tssr78677	transcription start site region 78677	987 bp downstream
Tssr82374	transcription start site region 82374	1179 bp upstream
Tssr82375	transcription start site region 82375	1973 bp downstream