rs50750826 SNP Detail

Summary

• ID
  rs50750826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:118621974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACACCAG GCATGGAAAA
  AGCCAGGTAG TGGAGTTTGA ATACTTTTCT TGAAACGCTC TGACTTGCAT TTCTCTATGG
  GGGACATAAA TAACCCACCA AGGTAAAACA AGGATTCAAC TGCCAACTTT CCAGAAAATG
  TTGACACAAT AGCTTCTGAA AAACACATTG AAGTACGAAT TCAAAAGTGA AGAGGACAGC
  Y
  CTTTCTACCC TCTTTTGCAG CCCCTCTAGG ACAATCTTAA CTCAGGAAGC TATGCAGTAG
  AAACATGTGT GCCAAAGGCT ACATTAGACA TCTCATATTC ATTTTTTTAA GGTGATGGTT
  CAAATATGAC TCACCCAACT CTACTCTCCT TAGACTGGAA GAACTTATTT ATTTCTTAAG
  GAAAATATTG TGTGTCACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138901144	ENSMUSSNP1860166	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50750826					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:118621974 () rs orientation: forward

Symbol	Name	Function Class
Gm59652	predicted gene, 59652	412 bp upstream
Rr387829	regulatory region 387829	629 bp upstream
Rr474253	regulatory region 474253	1048 bp proximal
Tssr118148	transcription start site region 118148	361 bp upstream