rs50750970 SNP Detail

Summary

• ID
  rs50750970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28684414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTATGATAG CTTTCCGACC ACCACCAACT TCGATTTCCT
  GGGAGGAAAA AATGTCTGTG TCATTTTTCA GTCCTTAACC TCCATCTTCC TCATTCAAAT
  R
  GCACCACTCA CAGCCAAATA CCACCTGAAT CAAGGACCCG CCCCCTTCTG AGGCAGAGTC
  CTTGTAGTCC TTGTAGTCCC AAGTGCTAAG ATTAATATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52348258	NES15378187	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	A	G	A		G	A	A	G		G
ss137502168	ENSMUSSNP2430399	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss323971707	CHEV_12_29319280	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50750970					SNP	A	A	G	G	G	G	G	G	A	G	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52348258	NES15378187	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28684414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4510	CpG island 4510	850 bp proximal
Gm53713	predicted gene, 53713	1654 bp upstream
Rps7	ribosomal protein S7	within coordinates
Rr265285	regulatory region 265285	within coordinates
Rr369505	regulatory region 369505	1382 bp upstream
Tssr116014	transcription start site region 116014	818 bp downstream
Tssr116015	transcription start site region 116015	1417 bp downstream
Tssr116016	transcription start site region 116016	1428 bp downstream
Tssr116017	transcription start site region 116017	1452 bp downstream
Tssr116018	transcription start site region 116018	1476 bp downstream
Tssr116019	transcription start site region 116019	1499 bp downstream