rs50752147 SNP Detail

Summary

• ID
  rs50752147
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19487392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTATGGAC TCAGACATTA TATATGATTT TATAAACATG
  TACATTTTTT GTTATTCTAA AAGAGAAACT GATATAGTCA AGAAAATCTA GACGAAGTAG
  S
  CAGAATTCTG TGAAATGTGG TTTCATGTTC AGGGTTCTCC CAACAAATTG TATGGTTACC
  TGCATAAGGC TGTAATACTT GTTTGTGTTG ACAAAAAAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52626805	NES15515681	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G		C	C		C	C	C		C
ss148742646	ENSMUSSNP1451016	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						G
ss324277942	CHEV_13_19395091	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50752147					SNP	C	C	C	C	C	C	G	G	C	C	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626805	NES15515681	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19487392 () rs orientation: forward

Symbol	Name	Function Class
Rr275255	regulatory region 275255	1992 bp distal
Tcrg	T cell receptor gamma chain	within coordinates
Trgc2	T cell receptor gamma, constant 2	1838 bp downstream
Tssr118532	transcription start site region 118532	1901 bp upstream
Tssr121559	transcription start site region 121559	1156 bp downstream
Tssr121560	transcription start site region 121560	1215 bp downstream
Tssr121561	transcription start site region 121561	1766 bp downstream