rs50753376 SNP Detail

Summary

• ID
  rs50753376
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57958367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTGAAC AGTGGACAGC
  TCCTTAGGGT CCACAGTGCG ATGCAGCCCA CACTTGCCAG TCCTCTCAGA GACCTCAAAA
  GGTGAGCAGG ATGATTGATC CCTGGACTTA ATATCAGAGA GGTGGAGAGA CTTCTCAAAA
  GTCACATAGC TCTTGACAGA AATCTGCTAC AACTTCCCAA ATTAGTGCTG GGTTCCAGGT
  M
  GTGAGGTCAC AAGACCGGAC ACAAAGCGGC TGCTAGAGAA GCTGCTGACT GCATGCATTC
  ACATGATAGA CTTTGGGGAG ATAAGCAGCA GCTGGGGTAC ACAAAAAGGG GGGTTCTTGA
  TGTTTTCAAT CCTAGTATGT ATCAAACCCC TTCTTGGCTC CTTGAGCTTC CACTTAACTG
  GTCTTTCCTT CTTGGTCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61406223	NES16780386	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	C	A	A	A	A		A	C	A		A
ss322972688	CHEV_9_57898891	CHEVERUD	SCREENING_POP	f	SNP										C				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50753376					SNP	C	A	A	A	C	A	A	A	A	C	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61406223	NES16780386	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57958367 () rs orientation: forward

Symbol	Name	Function Class
Ccdc33	coiled-coil domain containing 33	within coordinates
Rr679844	regulatory region 679844	1483 bp distal
Rr679845	regulatory region 679845	690 bp proximal
Rr679846	regulatory region 679846	1030 bp proximal