rs50754320 SNP Detail

Summary

• ID
  rs50754320
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176716069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATAGAAT CTGTACAGAG
  TCTCAAATGC CACTCCACAC TTTCCAGTTA TTCACTCTCA TTTTGAAAAA AATGACACCT
  GTATTGAGAT TATAAAGCTT TATTCTCAAC AATTTTAGAT CAAATTCTTG TTGTGATTAA
  TAATGAAATA AATGCCTAGC CTTTTAACAG TTTAATTTAA TTATAAAACA GTCATCATTT
  W
  ATTTTCCATA AGAATTGAAC CCTGACACTA AGTTAAGGCT ACTATTTATT AAGCATCAGC
  AAACTGTCAA AGTTGGAACT TGGGGATATG GTAGCTTTTC TAGAGCATAT GAAATTCAAC
  GTCCTCAGCC AGCCGGAGTA TGCCACAGTG GGAGCGCATG ATAAAGGGGA TGTATCTGTG
  ACTCCTATTT GAAAAGCACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60349135	NES15853695	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50754320					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60349135	NES15853695	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176716069 () rs orientation: forward

Symbol	Name	Function Class
Gm37490	predicted gene, 37490	1004 bp upstream
Sdccag8	serologically defined colon cancer antigen 8	within coordinates