rs50754329 SNP Detail

Summary

• ID
  rs50754329
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84739514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACACACAC GCGCACGCCG CAATATCACT CGGGCACCGG
  CCGCCTCTCG CCGGAGTCAC AATCGCCAAA CTACTTTTGC TAACAGTGAG GGTCGGTGCC
  R
  GGCTGGGCCC GGAGCAGGAG GCTAGGAGCT GGCCGGTCCA TGCACCCTGT TCCCTGGGCA
  GCTCTAGGAG GGTCCCCTTT CCGGTCGCCC GAGTTGTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148258143	ENSMUSSNP4767543	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50754329					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84739514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7469	CpG island 7469	within coordinates
Phf21b	PHD finger protein 21B	within coordinates
Tssr135727	transcription start site region 135727	229 bp upstream
Tssr135728	transcription start site region 135728	186 bp upstream
Tssr135729	transcription start site region 135729	168 bp upstream
Tssr135730	transcription start site region 135730	125 bp upstream
Tssr135731	transcription start site region 135731	707 bp downstream
Tssr135732	transcription start site region 135732	730 bp downstream
Tssr135733	transcription start site region 135733	752 bp downstream
Tssr135734	transcription start site region 135734	782 bp downstream
Tssr135735	transcription start site region 135735	799 bp downstream
Tssr135736	transcription start site region 135736	1228 bp downstream