rs50754678 SNP Detail

Summary

• ID
  rs50754678
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151245411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGCACTGA CTTCCTTCTC TTCATGAATT
  AGTATTCTGA CAGCAATCAC TCGTGGCTGT ATCCTAGAGC AGGTTGTCAG GGCAGAAAGC
  TGTTCGTTGT GATGGACCTC CTGAGTTCCT TTCCTCAGAC TTGTCCAGCA TCTCCAGTGA
  K
  TCATCCTCCC TGAGCACTCA TCTTGGTAAT GGGATCCCAA ACATGAGGAG CACTCAAAAC
  ATTTTGGATA CTTCCTAACT TCAACAAAGT TCTTCCTTTA GGTCTATAAA AACCATTTGT
  CTTAAGTTAA AGTGAAAACT ATTTCTATTT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60818977	NES16490703	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	G	G	G	G	G		T	G	G	T		G
ss320055941	CHEV_1_153216790	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50754678					SNP	G	G	T	G	T	G	G	G	G	G	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60818977	NES16490703	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151245411 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr420285	regulatory region 420285			1910 bp proximal
Swt1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant