rs50755743 SNP Detail

Summary

• ID
  rs50755743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40516890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCACAC ACACACACAC
  ACAAATACAA ATAACCTTGC TTTTCATGGT ACTTAGGATC ATAATTTGTT GGCCCTTGCA
  GGCAGGGACT TGGTCATTAA CTGCCTTTTC CGTATCAAGG ACCATGTACT GTACTGTCAT
  AACCTCATAT GGTCATATAG CTAATGTGAT GTAATAAGAC AAGTGGCCTT CAGCCTTGTG
  Y
  TAAGATTTGC TCAGCCATAC CTTTCATGAG GTAACTCTTT ACACCTTTAA AAAGATGTTC
  TGATGGAGTA ATCATCAACA CTGAGTAGAG TGCCTTTTGT ACATGGAGCC TCCTGCCATC
  CTTCACTGTG CTCAATCAGC CCAGGCTCTG TGCTGATCCC AGACCCTCTT AGAGCATCAT
  CTGGTGATGC TCACACGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63473791	NES16998906	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50755743					SNP	T	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63473791	NES16998906	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40516890 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	876 bp proximal
Gm63080	predicted gene, 63080	within coordinates
Rr501588	regulatory region 501588	655 bp proximal
Rr501589	regulatory region 501589	1552 bp proximal
Tssr4586	transcription start site region 4586	1801 bp upstream
Tssr131170	transcription start site region 131170	1387 bp upstream
Tssr131171	transcription start site region 131171	1418 bp upstream
Tssr131172	transcription start site region 131172	1500 bp upstream
Tssr131173	transcription start site region 131173	1526 bp upstream
Tssr131174	transcription start site region 131174	1575 bp upstream
Tssr131175	transcription start site region 131175	1714 bp upstream
Tssr131176	transcription start site region 131176	1765 bp upstream
Tssr131177	transcription start site region 131177	1814 bp upstream
Tssr131178	transcription start site region 131178	1843 bp upstream
Zfpm2	zinc finger protein, multitype 2	1548 bp upstream