rs50756025 SNP Detail

Summary

• ID
  rs50756025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37231188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGGAATC TTCCAGCGAG
  AGAACATTCT CTAAAGGAAA GAGCATCAGG GGCGAAAGAG GCCCTTGGTG AATTCAACAC
  CATGTTGTGT AAAAGGAATG GCTGAGAAGT AGAAAGGGAA GTACCTTCCC TATGTGACAA
  GATAAGTAAA GGCCCAAACT AGGACTGTCC TTTCAGCTTC TCTGGTATTT CTACAGCTTG
  R
  GTTTTGGAGA CTTTCTTAGG TGGGCACCAG AGACTACAAG GGGACATATT TTTGTAAATC
  TTTGTGGAGG AGGGTCCTGA CACAGATCCC TCATGGGAAA TGAGGTCCGG CTCTAGTAGA
  CACAGTGGTA TGCTTCTCCT ACCTTTCAGG TTGACACCCC TTGGCACCAG GCCTTGTAGC
  TCCTCAGTTG GGAGGTCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61768023	NES17689026	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	G	A		G	G	A	G
ss148880349	ENSMUSSNP6732170	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50756025					SNP	G	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61768023	NES17689026	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37231188 () rs orientation: forward

Symbol	Name	Function Class
F13a1	coagulation factor XIII, A1 subunit	within coordinates
Tssr122104	transcription start site region 122104	1970 bp downstream
Tssr122105	transcription start site region 122105	1991 bp downstream