rs50759051 SNP Detail

Summary

• ID
  rs50759051
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40479895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGCTGA GAGGTGGGGT
  TTAAGCAGAG CCTCTCCTGA TGCTGAGAAG TGGGGTTCAG GCAGAGTCCC TCCTGATGCT
  GGGAAGTGGG GTGCAGGCAT AGCCCCTCCT GTGACTGAGA GGGGTGCTTC AGGCAGAGCT
  TCTCTTGAAG ATGAGAGTGG GGGTTCAGGC AGAGCCCCTC CTGAAAAGAA CACTGAGATG
  R
  AAAATGAGAT AGAAAACATG AAAGTGAGTA ACCTGGGGGG ATTCTGATGG TGATAAATAA
  ATATCTTCCA TGGTGCCCAG CACCCAGGAT GTTGGCATCA GTTACTTTGT GTTAGAGAGG
  TGTTATTCTT CCTTTCCACA TGTTACTTAT GTATCTGCAT AAAAAATGTG AGAAAGTATT
  AAACACTGTT TTGTAAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61273430	NES16884147	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50759051					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273430	NES16884147	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40479895 () rs orientation: forward

Symbol	Name	Function Class
Rr214672	regulatory region 214672	1106 bp proximal
Rr222650	regulatory region 222650	987 bp proximal
Slc22a16	solute carrier family 22 (organic cation transporter), member 16	within coordinates