rs50760771 SNP Detail

Summary

• ID
  rs50760771
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84925090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCAAATTGCA GGCCATACTG CCCTACACTA GGCCCCATAC
  CGGCAGCTGA ATGACAGAGC TGGGCGCCCT CCCCGGATGC GGGGGAGCGG CAGTGCCCCA
  G
  CGAGGGGGCA GGGATCTGGT GGGCCCGGGA CAGTCCACAA CACAGTCGGT CGCCACGGCG
  ACAGGAGGCG GGCTGCCTGA CGGCCTGAGG CGCTAGCCGC C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145374839	ENSMUSSNP313100	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs50760771					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84925090 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20681	CpG island 20681	388 bp distal
Cpgi20682	CpG island 20682	within coordinates
Cpgi20683	CpG island 20683	1681 bp proximal
Gm26887	predicted gene, 26887	within coordinates
Gm56830	predicted gene, 56830	within coordinates
Gm56836	predicted gene, 56836	within coordinates
Gm64014	predicted gene, 64014	1516 bp downstream
Rr186982	regulatory region 186982	within coordinates
Rr186983	regulatory region 186983	1310 bp proximal
Rr368563	regulatory region 368563	902 bp downstream
Tssr2623	transcription start site region 2623	983 bp upstream
Tssr2624	transcription start site region 2624	302 bp upstream
Tssr78371	transcription start site region 78371	1045 bp downstream
Tssr82076	transcription start site region 82076	868 bp upstream
Tssr82077	transcription start site region 82077	781 bp upstream
Tssr82078	transcription start site region 82078	502 bp upstream
Tssr82079	transcription start site region 82079	97 bp upstream
Tssr82080	transcription start site region 82080	67 bp upstream
Tssr82081	transcription start site region 82081	38 bp upstream