rs50761089 SNP Detail

Summary

• ID
  rs50761089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85697618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAACCAAAT ACAAAAAAGG AGAGAGGCCC AACGCAGACA
  AGATCTTTGC ACAAACAGAT CAAAACAAAC GAGCTAAGAG AGTAAGAAGG GCGACCGCGC
  Y
  GGCCCGCAAC TGGTGCGCGT CCGCTCCCGC CCCCTCGAAG CCCGGGGCTG GCGGGCTGCA
  AAGCTTCCAA GCTCCGACCC ACTTCCTTTC TTATTCTCAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss60245678	NES15750928	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs50761089					SNP	T	T	T	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60245678	NES15750928	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85697618 () rs orientation: forward

Symbol	Name	Function Class
Adamts5	ADAM metallopeptidase with thrombospondin type 1 motif 5	within coordinates
Cpgi8391	CpG island 8391	258 bp distal
Cpgi8392	CpG island 8392	within coordinates
Gm46558	predicted gene, 46558	within coordinates
Rr319329	regulatory region 319329	1218 bp distal
Rr325517	regulatory region 325517	within coordinates
Tssr141913	transcription start site region 141913	1374 bp upstream
Tssr141914	transcription start site region 141914	478 bp upstream
Tssr141915	transcription start site region 141915	450 bp upstream
Tssr141916	transcription start site region 141916	421 bp upstream
Tssr141917	transcription start site region 141917	97 bp upstream
Tssr141918	transcription start site region 141918	39 bp upstream
Tssr141919	transcription start site region 141919	within coordinates
Tssr141920	transcription start site region 141920	326 bp downstream
Tssr141921	transcription start site region 141921	388 bp downstream
Tssr141922	transcription start site region 141922	617 bp downstream
Tssr141923	transcription start site region 141923	1062 bp downstream