rs50761213 SNP Detail

Summary

• ID
  rs50761213
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:38940359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCTG CCGCTGCTGT CCGACCCCCG
  C
  GGCGCTGAGG AGGAAGGGAA ACCCG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134846136	ENSMUSSNP2571148	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320724096	CHEV_3_38785132	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50761213					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38940359 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	within coordinates
Fat4	FAT atypical cadherin 4	mRNA-UTR
Gm56780	predicted gene, 56780	within coordinates
Gm65329	predicted gene, 65329	664 bp upstream
Rr575717	regulatory region 575717	675 bp distal
Rr575718	regulatory region 575718	1716 bp distal
Rr575719	regulatory region 575719	511 bp distal
Rr575720	regulatory region 575720	87 bp distal
Rr575721	regulatory region 575721	240 bp proximal
Rr575722	regulatory region 575722	1552 bp proximal
Rr575723	regulatory region 575723	1673 bp proximal
Rr575724	regulatory region 575724	1822 bp proximal
Tssr28930	transcription start site region 28930	879 bp downstream
Tssr28931	transcription start site region 28931	508 bp downstream
Tssr28932	transcription start site region 28932	482 bp downstream
Tssr28933	transcription start site region 28933	446 bp downstream
Tssr28934	transcription start site region 28934	356 bp downstream
Tssr28935	transcription start site region 28935	323 bp downstream
Tssr28936	transcription start site region 28936	305 bp downstream