rs50762347 SNP Detail

Summary

• ID
  rs50762347
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:78320272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGGATAC ACTGGCCCTT
  TCTGTGATCA AGACATTGAC AACTGTGACC CCAGTAAGTG CAGGGATCTT TGGGGTGCTT
  CCTTTTCCTG GCACTGTGTT GTTTCCTGAC TTTCCTGACA ACACTTATTC CCCTCATTCA
  TGAGAGCCTT ACTTCCATCT CAGCACCACT ATATAATTAG GGCTGCTGGG ATGACTCTGC
  W
  GGGAAAAGCA CTGCTTCTAA ACCTGATGAA CCTACATCAG CCCTACAAGT TGTCTTCTGA
  TCTCTACATG CCTGCTATGC ACACACACAC ACACACACAA ACACACACAC ACACACACAG
  AAAAATGAAA TAAAAAGTTA AAAAATGTTT TATTTAAGCC AATATAGAAA ATATTTTCAT
  TTTCACATAT AAGGCTTCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52381062	NES15269765	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50762347					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52381062	NES15269765	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:78320272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1783	CpG island 1783	1952 bp distal
Gm9978	predicted gene 9978	132 bp downstream
Rr225087	regulatory region 225087	1471 bp distal