rs50762731 SNP Detail

Summary

• ID
  rs50762731
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19115049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTGGTA TATCTGAAAA
  CAGCTACAAT GTACTTATAT ATAACAAATA AATCTTAAAA AAAAAAAGAA AGAAAAGAAA
  GGATGAAATG AAGGGAGGAA GGACTAAAAG GTGATATTTG AGCAAGAATC CAGAGATATG
  AAATAACTGA CAGCATTGTC CAGCCCTCAG GTGGGTTAGC CACAAGCTGG GGCCAGCCAC
  C
  CAGGCTATAG AGTGAGCTCC GGACCAGCTT GGGTTACATA GTACGACTGT CTACTGAGGC
  CTGTACCTCA TGAGATGGCT CATGAGGTAC AGGCCTTTTG ACCTGAGTTC GATTCCCACA
  CATAGTGGAA GGAAAGGACT GAACCAAATT CTGCAGGTTT CCTCTTCCTT CCACAGGCCA
  GAGGTATTGG ATTCCATGGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148474229	ENSMUSSNP550269	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50762731					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19115049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18481	CpG island 18481	428 bp proximal
Ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2	893 bp upstream
Gm26852	predicted gene, 26852	1096 bp downstream
Rr400148	regulatory region 400148	664 bp upstream
Rr643124	regulatory region 643124	396 bp proximal
Rr643125	regulatory region 643125	873 bp proximal
Tssr64844	transcription start site region 64844	881 bp upstream